Blast Genetics Essay

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Name: Elizabeth Green BLAST Assignment Answer Sheet Please read the instructions found in the BLAST handout and record all answers on this worksheet ELECTRONICALLY. If you choose to hand write you answer, you will need to create some space for some of the answers! This answer sheet MUST be emailed to your TA by your discussion TIME on the due day listed on the discussion syllabus. REMEMBER THAT ALL ANSWERS ARE SUPPOSED TO BE IN YOUR OWN WORDS!! PART ONE BLASTN 6a. Briefly explain what information is contained within this summary. This summary includes the identification and name of the species that the sequence originated from, the chromosome number, the accession value, and then the score and the e-value. 6b. Given your knowledge of sequence similarity measures, which color is least desirable? Most desirable? Explain. A low e-value and a high score is the best indicator of a high match strength. Therefore, red is the most prevalent and with a score of 1548 and e-value of 0, seems to be the most desirable. This is followed by purple, green, and then blue. 7a. Record the score 1548 and the e--‐value 0. Alignment Vibrio cholerae MS6 DNA, complete genome, chromosome 1 [pic] [pic] 78b. How many base pairs long is the alignment? 2936971 base pairs 7c. In which organism is this similar sequence found? Is there any variation in different strains of this species? Vibrio cholera, and there is a lot of variation in different strains of this species. I found 15 variations. 7d. Is there any information about what protein the gene encodes? I could not find any information about what protein the gene encodes except when I followed the link back to the Pubmed publication which mentioned that it is for a transmembrane protein. 7e. Look further down the list for 2 other species of organisms. Collect the scores, e-values, and

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